".bashrc"
# .bashrc
# Source global definitions
if [ -f /etc/bashrc ]; then
. /etc/bashrc
fi
if [ -f ~/.config/.localrc ]
then
. ~/.config/.localrc
fi
set -o vi
unalias ls
==============================
".localrc"
######################################
# Set up data location by hostname
######################################
hnStr=`hostname`
declare -a hostArr
declare -a src_dirArr
declare -a data_dirArr
hostArr=('badger' 's4' 'cardinal' 'fe' 'jibb')
# Separate source and data into two locations
data_dirArr=("/data/${LOGNAME}" \
"/data/users/${LOGNAME}" \
"/data/users/${LOGNAME}" \
"/scratch2/portfolios/NESDIS/drt/noscrub/${LOGNAME}" \
"/data/users/${LOGNAME}")
src_dirArr=("/data/${LOGNAME}" \
"/data/users/${LOGNAME}" \
"/data/users/${LOGNAME}" \
"/scratch2/portfolios/NESDIS/h-sandy/noscrub/${LOGNAME}" \
"/data/users/${LOGNAME}")
iat_src_dirArr=("/data/${LOGNAME}" \
"/data/users/${LOGNAME}/iat" \
"/data/users/${LOGNAME}/iat" \
"/scratch2/portfolios/NESDIS/h-sandy/noscrub/${LOGNAME}" \
"/data/users/${LOGNAME}")
iat_ws_dirArr=("/data/${LOGNAME}" \
"/data/users/${LOGNAME}/workspace" \
"/data/users/${LOGNAME}/workspace" \
"/scratch2/portfolios/NESDIS/drt/noscrub/${LOGNAME}/workspace" \
"/data/users/${LOGNAME}")
SIZE=${#hostArr[@]} # array size
emptyStr=""
notSupportStr="NOT_SUPPORTED_HOST"
searchStr="${emptyStr}"
for (( i=0; i<$SIZE; i++)); do
searchStr=` echo $hnStr |grep -e "${hostArr[${i}]}" `
if [ "${searchStr}" != "${emptyStr}" ]
then
data_dir=${data_dirArr[i]}
src_dir=${src_dirArr[i]}
iat_src_dir=${iat_src_dirArr[i]}
iat_ws_dir=${iat_ws_dirArr[i]}
break
fi
done
##############################################
# Now export data_dir for use by downstream
##############################################
export data_dir
export iat_src_dir
export iat_ws_dir
alias data=" cd ${data_dir} "
alias iat=" cd ${iat_src_dir} "
alias iatws="cd ${iat_ws_dir} "
###################################################
# Various configurations
###################################################
# 1. dir
if [ -f ~/.config/.dirrc ]
then
. ~/.config/.dirrc
fi
# 2. iat
if [ -f ~/.config/.iatrc ]
then
. ~/.config/.iatrc
fi
# 3. misc
if [ -f ~/.config/.miscrc ]
then
. ~/.config/.miscrc
fi
# 4. module
if [ -f ~/.config/.modulerc ]
then
. ~/.config/.modulerc
fi
# 5. ps
if [ -f ~/.config/.psrc ]
then
. ~/.config/.psrc
fi
# 6. sftp
if [ -f ~/.config/.sftprc ]
then
. ~/.config/.sftprc
fi
# 7. submit job
if [ -f ~/.config/.subjobrc ]
then
. ~/.config/.subjobrc
fi
# 8. svn
if [ -f ~/.config/.svnrc ]
then
. ~/.config/.svnrc
fi
# 9. my tool
if [ -f ~/.config/.toolrc ]
then
. ~/.config/.toolrc
fi
# 10. gsi
if [ -f ~/.config/.gsirc ]
then
. ~/.config/.gsirc
fi
====================================
".dirrc"
#
alias "gg=cd .."
alias "ggg=cd ../.."
alias g2="cd ../.."
alias g3="cd ../../.."
alias g4="cd ../../../.."
alias ff='fdir=`pwd`'
alias ff1='fdir1=`pwd`'
alias ff2='fdir2=`pwd`'
alias ff3='fdir3=`pwd`'
alias bb='cd ${fdir} '
alias bb1='cd ${fdir1} '
alias bb2='cd ${fdir2} '
alias bb3='cd ${fdir3} '
alias lr="ls -ltr "
alias la="ls -a "
alias hn="hostname "
alias h="history "
alias tf="tail -f "
alias trf="tree -f "
alias trd="tree -d "
alias rf="rm -rf "
alias vhead="od -t a $1 | head -10 "
=================================
".miscrc"
# .bashrc
alias config="cd ~/.config"
alias vb="vi ~/.bashrc"
alias rb=". ~/.bashrc"
alias showa="alias |sort |less "
# delete old files
alias d3="find -ctime 3 -type f |xargs rm -rf "
alias d2="find -ctime 2 -type f |xargs rm -rf "
# list directory
alias ldir="find -type d "
#shell
alias whichshell='echo $0 ' # or ' ps -p $$ '
# rsync
alias rsynclocal="rsync -zvh "
alias rsyncremote="rsync -azvh dxu@s4-gateway.ssec.wisc.edu:"
# matlab
alias mlonly="matlab -nosplash -nodesktop "
set -o vi
======================================
".modulerc"
# module command
alias mload="module add " # add one module
alias munload="module unload " # delete all modules
alias mpurge="module purge " # unload all modules
alias mlist="module list " # list LOADED modules
alias mavail="module avail " # list available modules
alias mspider="module spider " # get info about a module
alias mwhatis="module whatis " # get info about a module
MODULE_USE_STR=" \n\
module add # add one module \n\
module unload # delete all modules \n\
module purge # unload all modules \n\
module list # list LOADED modules \n\
module avail # list available modules \n\
module spider # get info about a module \n\
module whatis # get info about a module \n\
\n\
\n\
\n\
"
alias module_info='printf "$MODULE_USE_STR " '
==================================
".psrc"
# ps command
alias psef="ps -ef |grep ${LOGNAME} " # all the process
alias ptree="ps -ejH " # process tree
alias pthread="ps -eLf " # thread info
alias pcmd="ps -fp " # + PID#
======================================
".sftprc"
# sftp
alias tome=" mail -s 'from s4' deyong.xu@noaa.gov < " # followed by a file
# ssh mode
alias s4=" ssh dxu@s4-gateway.ssec.wisc.edu "
alias badger="ssh -X dxu@badger.ssec.wisc.edu "
alias cardinal="ssh -X dxu@s4-cardinal.ssec.wisc.edu "
# sftp mode
alias ss4=" sftp dxu@s4-gateway.ssec.wisc.edu "
alias sbadger=" sftp dxu@badger.ssec.wisc.edu "
alias scardinal="sftp dxu@s4-cardinal.ssec.wisc.edu "
alias hn="hostname "
alias sts="echo /data/users/dxu/transferStation/ "
alias tosts="cd /data/users/dxu/transferStation/ "
=============================================
".subjobrc"
####################
#1. slurm command
####################
slurm_usage=" \n\
# \n\
# slurm command list: \n\
# sbatch : Handles serial jobs. Also used as a first step for MPI jobs. \n\
# srun : MPI-capable job submission, usually run from within a script run via sbatch. \n\
# sinfo : Displays nodes/and partitions. \n\
# squeue : Shows you the list of jobs running and yet to be run. \n\
# scancel : Delete a job \n\
# sstat : Get the status of a job \n\
# scontrol : Manipulate or view details on a job. For example 'scontrol -dd show job <jobid>' \n\
# \n\
# \n\
"
alias slurm_info='printf "$slurm_usage" '
#######################
#2. qsub command
#######################
#
qsub_usage=" \n\
# \n\
# qsub # Small job, followed by '-N MyJob a.sh' \n\
# qsub -pe smp # Medium job, followed by '48 -N MyJob a.sh' \n\
# qsub -pe mpi2_mpd # Big job, followed by '192 -N MyJob a.sh' \n\
# qstat -u uid # Check job status \n\
# showq -u uid # Show job queues \n\
# qstat -xml # List job in xml format \n\
# qacct -j your_job_id # Info about a completed jobs \n\
# qresub # Resubmit a job \n\
# qdel # Delete a job \n\
# \n\
# \n\
"
alias qsub_info='printf "$qsub_usage" '
alias qstatme=" qstat | grep ${LOGNAME} "
alias rserial=" qsub " # small job, followed by " -N MyJob a.sh"
alias rsmp=" qsub -pe smp " # medium job, followed by "48 -N MyJob a.sh"
alias rmpi=" qsub -pe mpi2_mpd " # big job, followed by "192 -N MyJob a.sh"
alias jobstat=" qstat -u ${LOGNAME} "
alias jobqueue="showq -u ${LOGNAME} "
===========================================
".svnrc"
# svn commands
alias ss="cat .svn/entries | head -5 | tail -1 ; echo"
alias sstatus="svn status "
alias sco="svn co --ignore-externals "
alias sci="svn ci "
alias sadd="svn add "
alias supdate="svn update --ignore-externals "
alias smove="svn move "
alias sdelete="svn delete "
alias slog="svn log "
alias sinfo="svn info "
alias srevert="svn revert "
alias svndiff="svn diff "
alias svndiffprev="svn diff -r HEAD:PREV "
alias svncomp="svn diff -c "
alias svnreslvServer="svn resolve --accept=theirs-full "
alias svnreslvLocal="svn resolve --accept=mine-full "
alias sm='svn commit -m "" '
# Delete svn files
# alias rmsvn="find . -name '*svn*' |xargs rm -rf "
# alias rmelog="find . -name '*.e[0-9][0-9]*' |xargs rm -rf "
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